Posts Tagged: almond

Almond crop yields threatened by disease new to California

Detection of fungus causing red leaf blotch spurs call for grower vigilance

Symptoms of red leaf blotch (RLB), a plant disease caused by the fungus Polystigma amygdalinum, have been observed for the first time in California across the Northern San Joaquin Valley.

Molecular DNA testing by the laboratory of Florent Trouillas, University of California Cooperative Extension fruit and nut crop pathology specialist, has detected P. amygdalinum. Pest identification was confirmed by the California Department of Food and Agriculture and U.S. Department of Agriculture.

The disease, named for the characteristic orange-to-dark red blotches that appear on infected leaves, is typically nonlethal for trees but has been a long-standing problem for almond-growing regions across the Mediterranean. Causing trees to lose their leaves prematurely, the fungal pathogen can significantly diminish crop yields in the current year and the next.

“It is one of the most severe diseases of almonds for Spain and the Middle East,” said Trouillas, an associate professor in the UC Davis Department of Plant Pathology. He recently co-authored an explanatory article on the UCCE San Joaquin Valley Trees and Vines blog.

With symptomatic trees seen in multiple orchards across Madera, Merced, San Joaquin and Stanislaus counties, Trouillas said RLB is already “somewhat widespread.”

“From the first observations so far, it seems like it affects some of the most-planted cultivars, like Nonpareil and Monterey,” he added. “We've observed it in a diversity of cultivars already.”

UC Cooperative Extension specialist urges taking preventive measures

According to Trouillas, RLB caused by P. amygdalinum is “highly specific” to almond trees, and generally only affects their leaves. Infection typically happens at petal fall, when small leaflets are first emerging and most susceptible to disease. After the pathogen's latent period of about 35 to 40 days, the first symptoms appear – small, pale-yellow spots on both sides of the leaves.

Those blotches become yellow-orange and then reddish-brown in the advanced stages of the disease during June and July. Now, with RLB symptoms becoming more prominent, Trouillas and UC Cooperative Extension advisors across the Central Valley have seen an uptick in calls.

“PCAs [pest control advisers] have been confused because they've never seen anything like this,” said Trouillas, noting that the yellow-orange-red blotches are symptoms unique to RLB and cannot be confused with other known almond diseases.

Applying fungicides after RLB symptoms appear is ineffective, Trouillas said. The best thing growers can do at this point is to report symptomatic trees to researchers so they can track the prevalence and distribution of the disease.

Growers who see signs of this new disease in their orchard should contact their local UC Cooperative Extension farm advisor.

Preventive measures are the best way to manage RLB, Trouillas said. He urges concerned growers to think ahead to next winter/spring and plan for fungicide applications at petal fall and – if rains persist – also at two weeks and five weeks after petal fall. Fortunately, those are the same three key timings for managing other diseases, like shot hole and almond anthracnose.

“Because RLB is something that is introduced and potentially aggressive, it will be important for growers to keep that in mind next year and be on schedule for next year's spraying program,” Trouillas said.

Additional information on RLB can be found at https://www.sjvtandv.com/blog/first-detection-of-red-leaf-blotch-a-new-disease-of-almond-in-california.

Almond growers should prepare for possibility of unusual disease outbreak

Wet winter, El Niño create favorable conditions for aerial Phytophthora pathogen

With heavy rains in the forecast amid strengthening El Niño conditions, almond growers should be on the lookout for a rare disease that can cause severe damage to their orchards, according to Florent Trouillas, a University of California Cooperative Extension specialist in fruit and nut pathology.

Phytophthora, soilborne microorganisms dubbed “water molds” because of their dependence on water, typically cause root and crown rot at the base of trees. But a few aerial Phytophthora can travel upwards and infect the higher parts of the tree. One species – Phytophthora syringae – is drawing special attention due to an unprecedented outbreak last winter, fueled by the atmospheric rivers that lashed California.

“It was found statewide – meaning in every almond-producing county – and disease incidence in orchards ranged from 10% of the trees infected to 75%,” said Trouillas, a UC Davis plant pathologist whose lab is based at UC Agriculture and Natural Resources' Kearney Agricultural Research and Extension Center in Parlier.

Trouillas and his colleagues, UC Davis graduate student Alejandro Hernandez and UC Riverside plant pathology professor Jim Adaskaveg, recently published a detailed online article describing the pathogen, which can infect a range of crops but mainly impacts almonds in California.

Although it doesn't kill the tree, the disease causes branch dieback that requires significant additional work and expense for almond growers. In 2022, almonds were the state's fourth-highest valued commodity, at $3.52 billion.

During last year's aerial Phytophthora outbreak, researchers also observed a new and troubling phenomenon: P. syringae, historically known to attack the cuts caused by pruning, was directly infecting the young shoots on almond trees – without any wounds.

“This was really the first time we had seen widespread evidence of infection on the twigs,” Trouillas said.

Although generally rare, outbreaks of P. syringae have been traditionally associated with wet El Niño years, according to Trouillas – and recent and persistent rain across the state should have growers on high alert.

Prune in dry weather, monitor, mitigate if necessary

While almond growers tend to prune during the downtime of winter, they should keep an eye on the forecast and aim for a 10- to 14-day window of dry weather to perform those tasks, whether training young trees or maintaining the established ones.

“If growers were to prune around a rain event – before, during or shortly after – this increases the likelihood of infection because this pathogen moves around with water,” Trouillas explained.

Researchers speculate that P. syringae, normally found in the soil, gets carried into the upper parts of a tree through strong winds and heavy rain. Alternatively, harvest processes like shaking and sweeping also produce air movements that may blow the microorganism into the canopy, where it waits for a favorable wet environment. The pathogen then attacks the wounds or young shoots, producing characteristic cankers and gumming.

The patterns and colors of the gum balls are keys to diagnosing an infection of this particular aerial Phytophthora. Starting around bloom time (mid-February), growers should monitor pruning wounds and young shoots on their trees, especially in the canopy, for signs of the disease.

The unique coloration of the gum balls – ranging from gold and amber to dark burgundy to bright red (see photos) – generally indicates P. syringae infection. But growers are urged to contact their local Cooperative Extension advisor for confirmation.

“It is super critical for growers that, whenever they see gumming, not to assume that it is this aerial phytophthora, because there are many other diseases that can cause gumming on the tree,” Trouillas said.

If the diagnosis is confirmed, growers may apply a compound that can mitigate the infection. The plant pathologists' recent writeup describes several curative treatment options, as well as a preventive measure that reduces the amount of pathogen in the soil and thus the likelihood of infection.

For more information on the pathogen's history and biology, as well as various options for disease management, visit the article on Sacramento Valley Orchard Source: https://www.sacvalleyorchards.com/almonds/trunk-soil-diseases/aerial-phytophthora-outbreaks-in-wet-years.

New pest infesting almonds and pistachios in the San Joaquin Valley

Crop sanitation will be key to controlling the invasive carpophilus beetle

Growers and pest control advisers (PCAs) should be on the lookout for a new pest called carpophilus beetle (Carpophilus truncatus). This pest was recently found infesting almonds and pistachios in the San Joaquin Valley, and is recognized as one of the top two pests of almond production in Australia. Damage occurs when adults and larvae feed directly on the kernel, causing reductions in both yield and quality.

Populations of carpophilus beetle were first detected in September in almond and pistachio orchards by University of California Cooperative Extension Specialist Houston Wilson of UC Riverside's Department of Entomology. Pest identification was subsequently confirmed by the California Department of Food and Agriculture.

Wilson is now working with Jhalendra Rijal, UC integrated pest management advisor, North San Joaquin Valley; David Haviland, UCCE farm advisor, Kern County; and other UCCE farm advisors to conduct a broader survey of orchards throughout the San Joaquin Valley to determine the extent of the outbreak.

To date, almond or pistachio orchards infested by carpophilus beetle have been confirmed in Stanislaus, Merced, Madera and Kings counties, suggesting that the establishment of this new pest is already widespread. In fact, some specimens from Merced County were from collections that were made in 2022, suggesting that the pest has been present in the San Joaquin Valley for at least a year already.

“It has likely been here for a few years based on the damage we've seen," Rijal said.

This invasive beetle overwinters in remnant nuts (i.e. mummy nuts) that are left in the tree or on the ground following the previous year's harvest. Adults move onto new crop nuts around hull-split, where they deposit their eggs directly onto the nut. The larvae that emerge feed on the developing kernels, leaving the almond kernel packed with a fine powdery mix of nutmeat and frass that is sometimes accompanied by an oval-shaped tunnel.

Carpophilus beetle has been well-established in Australia for over 10 years, where it is considered a key pest of almonds. More recently, the beetle was reported from walnuts in Argentina and Italy as well. Carpophilus truncatus is a close relative to other beetles in the genus Carpophilus, such as the driedfruit beetle (C. hemipterus) that is known primarily as a postharvest pest of figs and raisins in California.

Monitoring for carpophilus beetle is currently limited to direct inspection of hull split nuts for the presence of feeding holes and/or larvae or adult beetles. A new pheromone lure that is being developed in Australia may soon provide a better monitoring tool for growers, PCAs and researchers.

“We're lucky to have colleagues abroad that have already been hammering away at this pest for almost a decade,” said Haviland. “Hopefully we can learn from their experiences and quickly get this new beetle under control.”

The ability to use insecticides to control carpophilus beetle remains unclear. The majority of the beetle's life cycle is spent protected inside the nut, with relatively short windows of opportunity available to attack the adults while they are exposed. The location of the beetles within the nut throughout most of their life cycle also allows them to avoid meaningful levels of biological control.

In the absence of clear chemical or biological control strategies, the most important tool for managing this beetle is crop sanitation.

“Given that this pest overwinters on remnant nuts, similar to navel orangeworm, crop sanitation will be fundamental to controlling it,” Wilson said. “If you needed another reason to clean up and destroy mummy nuts – this is it.”

In Australia, sanitation is currently the primary method for managing this pest. And here in California, new research and extension activities focused on carpophilus beetle are currently in the works.

“It's important that we get on top of this immediately,” said Wilson. “We're already starting to put together a game plan for research and extension in 2024 and beyond.”

If you suspect that you have this beetle in your orchard, please contact your local UC Cooperative Extension farm advisor (https://ucanr.edu/About/Locations/), County Agricultural Commissioner (https://cacasa.org/county/) and/or the CDFA Pest Hotline (https://www.cdfa.ca.gov/plant/reportapest/) at 1-800-491-1899.

Winter atmospheric rivers gave pathogens, diseases path to infect crops

Outbreaks similar to El Niño-influenced issues of the 1990s

The wave of atmospheric rivers that swept across the state this winter has created the right conditions for plant pathogens that haven't been seen for decades in California. University of California, Davis, plant pathologist Florent “Flo” Trouillas is getting more calls from growers and farm advisors concerned about potential crop damage.

“Generally, whenever you have rain events, you're going to have problems,” said Trouillas, a Cooperative Extension specialist who is based at the Kearney Agricultural Research and Extension Center in Parlier. “In wet years we get really busy because most pathogens need and like water.”

Trouillas is like a disease detective. He splits his time between the field and the lab, working to diagnose pathogens, diseases and other ailments that strike fruit and nut crops such as almonds, cherries, olives and pistachios.

On a recent visit to an almond orchard near Fresno, Trouillas joined Mae Culumber, a nut crops farm advisor for UC Cooperative Extension Fresno County. A few weeks earlier, the two had walked the orchard, taking note of the base of some trees that had gumming — a thick, jelly-looking substance indicating a pathogen had taken hold.

“A lot of what Florent is doing is trying to assess patterns on a landscape,” Culumber said. “Sometimes things may look like they are one thing, but it could be another problem.”

When the two returned weeks later, the amber-colored gumming had moved into the canopy, looking like gumballs stuck to branches, some of which were already dead. “It's getting out of control from before,” Trouillas says. “This branch was killed. This is widespread.”

From the field to the lab

Lab testing confirmed what Trouillas believed was the culprit: Phytophthora syringae, a pathogen that can affect almond crops but is rarely seen in California. If it is found, generally the site of infection are wounds caused by pruning, but that is not the case here, where the infection began in the canopy at twigs, or small branches.

It is a threat to a key crop, which according to the California Department of Food and Agriculture, generates $5 billion annually. The last time Phytophthora syringae hit California was in the 1990s after a series of El Niño-influenced storms. Trouillas, who has a photographic memory, remembered reading about it in an old manual.

“It's rare for California and one that we see mostly following atmospheric rivers,” he says.

“The disease will only happen following these extremely wet winters.”

Phytophthora is soilborne, mostly found in tree roots, and doesn't generally spread up into branches. But the intense storms created the right conditions for the pathogen to “swim” up trunks as winds blew spores into the air and rain dropped them back down into the canopy, Trouillas said.

Some of the trees in this orchard will die; others can be saved by pruning infected branches and applying a recommended fungicide, he said.

Identification, diagnosis, education

Trouillas is one of more than 50 Cooperative Extension specialists at UC Davis and each is charged with identifying problems and developing solutions for those issues in support of agriculture, the ecosystem and communities throughout the state.

In his role, Trouillas focuses not only on pathology and research but also on educating growers, nursery staff, pest control advisers and others in agriculture about ways to manage potential threats and how to prevent crop damage.

“His role is very crucial,” said Mohammad Yaghmour, an orchard systems advisor for UC Cooperative Extension Kern County. “He's not only on this mission to educate growers but he's also a source of education for us.”

Trouillas typically conducts one or two site visits a week, usually after a farm advisor reaches out about a problem they can't solve on their own.

“This allows us to be at the forefront of disease detections in California,” he said.

He likens these visits to house calls a doctor would make, only to fields instead. And one of those calls recently took him to a cherry orchard in Lodi.

“These guys help me quite a bit,” said Andrew Vignolo, a pest control adviser with Wilbur-Ellis who asked for a consult. “I bug them a lot.”

The visit starts like any consult in a doctor's office, only the questions come fast as they walk around the Lodi orchard where branches are dying, there is gumming and the trees appear stressed. Some look to be sunburned from exposure. Old pruning wounds show cankers, indicating that past disease treatments didn't get rid of whatever was affecting the trees.

Trouillas asks about the cultivar of the trees because some varieties are more susceptible to pests or diseases. He focuses on stress because that opens the door to disease.

Do they prune in the dormant winter months or in summer when pathogens are more prevalent? Does the soil get tested? How old are the trees? What about nutrition?

“I'm trying to figure out how they got infected so bad,” Trouillas said, walking the orchard. “Bacterial canker is a very mysterious disease.”

He thinks it might be a bacterial canker disease and shaves some bark to take to the lab for testing. He wants to come back next winter to take some samples to see where the pathogen is overwintering.

“We'll know in a few weeks if we have a fighting chance,” Vignolo said.

Be it Lodi, Fresno or elsewhere in the state, Trouillas focuses on local conditions. But what is learned in one field can be passed on to others, providing early warnings or advice for those in similar situations. “All these efforts at collaboration, from the field, to the lab, going through research projects, there's only one goal here — to help the farmers of California.”

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